28 - Jul - 2026

My Obsidian vault was a mess until I stopped using folders

My Obsidian vault used to be a mess of nested folders. I had a system, or so I thought. Notes about books, work, and random ideas each got their own folder, and I felt organized. Before going flat, I actually tried the famous PARA method (Projects, Areas, Resources, Archives). I spent more time agonizing over whether a note was an “Area” or a “Resource” than actually writing. That was the first clue my folder system needed a lazier approach.

I decided to ditch folders completely. Now I rely on search and a handful of properties to find everything I write.

Folders gave me fake organization

They felt tidy, but tidy isn’t the same as useful

Cluttered nested folder structure in Obsidian's file explorer.
Saikat Basu/MakeUseOf

Folders gave every note a place, and a sense of control. But folders also made it easy to hoard articles. For instance, the digital hoard of articles, notes, and thoughts in my ‘Psychology’ folder looked full and impressive, but I wasn’t actually interacting with any of the ideas. Thoughtless hoarding made the vault grow past a hundred notes, and the folder tree became a maze I dreaded opening.

I get the appeal of folders and how naturally they come to us. Folders are how we organize our closets, inboxes, and PC desktops, so it made sense to apply the same logic to Obsidian notes. It’s hard to shake that habit overnight. But tidy folders give you a dopamine hit for sorting, not for thinking. Obsidian’s job is to make you smarter while writing your notes.

Folders assume that, like physical objects, our notes should only exist in one place at a time. Also, another major flaw with folders is that they assume a note’s context is static. A note about “productivity during grad school” can belong in three categories at once, and a folder forces you to pick just one, burying the other two connections. A note on a coding language that starts in a ‘Current Projects’ folder can change its context with time.

Filing decisions wore me down

Better names didn’t fix the real problem

Obsidian's [[ link autocomplete suggesting an existing note.
Saikat Basu/MakeUseOf

I want Obsidian to capture all my notes, including the shower thoughts and the impromptu ones while out and about. But the folder system wasn’t quite the solution for my 30-second idea flashes, as it took 15 more seconds to find the right folder to file them in. Yes, Obsidian has Daily Notes and community plugins like Quick Add for instant capture, but you do have to process them eventually.

I found myself using Google Keep for quick thoughts because Obsidian felt too heavy with all its folders. Some of you might say that’s a filing problem, not a folder problem. Maybe I just needed better folder names or a stricter naming convention to keep myself honest about where things belonged.

The day I finally stopped fighting the structure, I wrote a note about a book, hit [[ to link a concept, and realized the concept was already mentioned in another from six months ago. Backlinks, the Graph View, and a Map of Content are all you need to do away with folders. This was when I stopped hesitating about importing unrelated notes from other apps into Obsidian.

Search became my new home base

Quick Switcher replaced browsing for good

Instead of clicking through folders, I hit Ctrl + O and type a few keywords. Obsidian’s Quick Switcher pulls up the note, no matter where it lives in the vault. Backlinks do even more of the work automatically; once I link a note, it shows up under every related note’s backlinks pane without any extra effort on my part. Open Graph View, and those same links form clusters that folders never could.

This only works if you remember what you named something or at least a few keywords. The folder-less Obsidian structure has forced me to become much better at naming my files. ‘Meeting Notes 1’ is useless in search. I had to train myself to write highly descriptive titles like “2026-07-14 Team Meeting with Amir.”

Instead of the Quick Switcher, you can also use the Ctrl + Shift + F shortcut for a global full-text search. Obsidian searches inside your notes, not just titles, so a forgotten title shouldn’t matter. Community plugins like Omnisearch can tackle content inside PDFs and images using OCR (requires a companion plugin called Text Extractor), and even handle typos.

Properties took over where folders left off

Frontmatter tags now do the sorting for me

Obsidian note properties panel with type, status, and tags fields.
Saikat Basu/MakeUseOf

Every note gets a few properties: type, status, and tags. I filter by these instead of digging through folders, and one note can carry several tags at once without any conflict between them, which folders never let me do.

Properties really show their utility when you filter your notes with the Dataview plugin. For instance, I tag my notes with status: active. A single dashboard note can then automatically generate a list of every active project in my vault.

Adding properties to every note sounds like more upfront work than just dragging it into a folder and forgetting about it completely. It’s a small cost upfront, but it pays off every single time I search later. One quick tagging pass beats years of re-filing notes that never fit cleanly into one category anyway, and it takes seconds once it becomes a habit built into how you write.

A day in my folder-free vault

My new note-taking routine with fewer decisions

Obsidian Inbox folder next to a Self-development MOC note.
Saikat Basu/MakeUseOf

When I create a note now, I skip the “where does this go” question entirely. I write, add a property or two, and move on. I had to go through a mindset shift to realize that a flat list of hundreds of notes isn’t any worse than messy folders were. You have to trust your Obsidian system and stop looking at them like a raw file list.

I now rely on a single Inbox folder (the only folder I kept!). I dump fast notes in there all week. Every Friday afternoon, I spend 10 minutes adding properties to those notes and moving them to the main root vault.

I have started creating MOCs (Maps of Content). If I have 50 notes on ‘Self-development’, I create one master note called ‘Self-development MOC’ that just links out to all of them. It acts like a custom, curated table of contents that is way more useful than a folder ever was.

Try a one-week folder-less experiment in your own vault

Ditching folders wasn’t an overnight fix; it took trust in Obsidian’s search and a little discipline with properties. The goal of a folder freeze isn’t to banish folders totally; it’s to force a change in how your brain relates to information. You stop asking ‘Where does this live?’ and start asking ‘What is this connected to?’ Hopefully, this simple shift will change how you take notes.

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